pyunicorn (Unified Complex Network and RecurreNce
analysis toolbox) is a fully object-oriented Python package for the advanced
analysis and modeling of complex networks. Above the standard measures of
complex network theory such as degree, betweenness and clustering coefficient
it provides some uncommon but interesting statistics like Newman’s random
pyunicorn features novel node-weighted (node splitting
invariant) network statistics as well as measures designed for analyzing
networks of interacting/interdependent networks.
pyunicorn allows to easily construct networks from uni- and
multivariate time series data (functional (climate) networks and recurrence
networks). This involves linear and nonlinear measures of time series analysis
for constructing functional networks from multivariate data as well as modern
techniques of nonlinear analysis of single time series like recurrence
quantification analysis (RQA) and recurrence network analysis.
For example, to generate a recurrence network with 1000 nodes from a sinusoidal signal and compute its network transitivity you simply need to type
import numpy as np from pyunicorn.timeseries import RecurrenceNetwork x = np.sin(np.linspace(0, 10 * np.pi, 1000)) net = RecurrenceNetwork(x, recurrence_rate=0.05) print net.transitivity()
The package provides special tools to analyze and model spatially embedded complex networks.
pyunicorn is fast because all costly computations are performed in
compiled C, C++ and Fortran code. It can handle large networks through the
use of sparse data structures. The package can be used interactively, from any
python script and even for parallel computations on large cluster